Score statistics for association of traits with haplotypes
Functions for single nucleotide polymorphisms (SNPs)
Hardy-Weinberg equilibrium test using MCMC
ALDH2 markers and Alcoholism
Regional association plot
Haplotype trend regression
Manhattan plot of p values
Plot haplotype frequencies versus haplotype score statistics
The HLA data
A case-control data involving four SNPs with missing genotype
Friedreich Ataxia data
Classic twin models
Cystic fibrosis data
Quantile-comparison plots
False-positive report probability
APOE/APOC1 markers and schizophrenia
Gene counting for haplotype analysis
Effect-size plot
Probability of familial clustering of disease
Fixed and random effects model for meta-analysis
A function to prepare pedigrees in post-MAKEPED format
LD statistics for two diallelic markers
Haplotype reconstruction
Permutation tests using GENECOUNTING
Power and sample size for case-cohort design
Meta-analysis of p values
Probability of familial clustering of disease
Power for case-control association design
genomic control
score statistics for testing genetic linkage of quantitative trait
A utility function to read ms output
LD statistics for two multiallelic markers
multiple imputation analysis for hap
A study of Alzheimer's disease with eight SNPs and APOE
Q-Q plot for uniformly distributed random variable
Test/Power calculation for mediating effect
genomic control based on p values
Multivariate meta-analysis based on generalized least squares
Statistics for 2 by K table
Bradley-Terry model for contingency table
Bayesian false-discovery probability
Crohn's disease data
Genetic analysis package
Internal functions for gap
Gene counting for haplotype analysis
A study of Parkinson's disease and MAO gene
Hardy-Weinberg equlibrium test for a multiallelic marker
Means and variances under 1- and 2- locus (biallelic) QTL model
kinship matrix for simple pedigree
Whittemore-Halpern scores for allele-sharing
Preparing weight for GENECOUNTING
Power for population-based association design
Print a hap.score object
Power calculation for two-stage case-control design
A study of Parkinson's disease and SNCA makers
Example data for association plot
Converting pedigree(s) to dot file(s)
Transmission/disequilibrium test of a multiallelic marker
Obtain correlation coefficients and their variance-covariances
Sample size for family-based linkage and association design
Chow's test for heterogeneity in two regressions
Gene counting for haplotype analysis
Kinship coefficient and genetic index of familiality