Probability of familial clustering of disease
Effect-size plot
Regional association plot
LD statistics for two multiallelic markers
Internal functions for gap
Bradley-Terry model for contingency table
Power for case-control association design
Heritability estimation according to twin correlations
Multivariate meta-analysis based on generalized least squares
A study of Alzheimer's disease with eight SNPs and APOE
Print a hap.score object
A case-control data involving four SNPs with missing genotype
Fixed and random effects model for meta-analysis
Plot haplotype frequencies versus haplotype score statistics
A study of Parkinson's disease and MAO gene
Test/Power calculation for mediating effect
Chow's test for heterogeneity in two regressions
Hardy-Weinberg equlibrium test for a multiallelic marker
Crohn's disease data
Sample size calculation for mediation analysis
Sample size for family-based linkage and association design
Hardy-Weinberg equilibrium test using MCMC
Kinship coefficient and genetic index of familiality
Example data for association plot
LD statistics for two diallelic markers
score statistics for testing genetic linkage of quantitative trait
genomic control
kinship matrix for simple pedigree
Converting pedigree(s) to dot file(s)
Obtain correlation coefficients and their variance-covariances
Genetic analysis package
A utility function to read ms output
Statistics for 2 by K table
False-positive report probability
Quantile-comparison plots
Classic twin models
Q-Q plot for uniformly distributed random variable
Whittemore-Halpern scores for allele-sharing
A study of Parkinson's disease and SNCA makers
Cystic fibrosis data
Probability of familial clustering of disease
Gene counting for haplotype analysis
Preparing weight for GENECOUNTING
Bayesian false-discovery probability
Power and sample size for case-cohort design
Manhattan plot of p values
Gene counting for haplotype analysis
A function to prepare pedigrees in post-MAKEPED format
Friedreich Ataxia data
Functions for single nucleotide polymorphisms (SNPs)
APOE/APOC1 markers and Alzheimer's
ALDH2 markers and Alcoholism
Power calculation for two-stage case-control design
Meta-analysis of p values
Haplotype reconstruction
Haplotype frequency estimation based on a genotype table of two multiallelic markers
multiple imputation analysis for hap
Permutation tests using GENECOUNTING
Power for population-based association design
Score statistics for association of traits with haplotypes
Gene counting for haplotype analysis
genomic control based on p values
Haplotype trend regression
Transmission/disequilibrium test of a multiallelic marker
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
The HLA data
Means and variances under 1- and 2- locus (biallelic) QTL model