Friedreich Ataxia data
Fixed and random effects model for meta-analysis
Hardy-Weinberg equlibrium test for a multiallelic marker
Test/Power calculation for mediating effect
kinship matrix for simple pedigree
Bayesian false-discovery probability
LD statistics for two multiallelic markers
Regional association plot
Hardy-Weinberg equilibrium test using MCMC
Power for population-based association design
Chow's test for heterogeneity in two regressions
LD statistics for two diallelic markers
Transmission/disequilibrium test of a multiallelic marker
A function to prepare pedigrees in post-MAKEPED format
A study of Parkinson's disease and SNCA makers
Cystic fibrosis data
Preparing weight for GENECOUNTING
score statistics for testing genetic linkage of quantitative trait
Power and sample size for case-cohort design
multiple imputation analysis for hap
ALDH2 markers and Alcoholism
genomic control based on p values
Power calculation for two-stage case-control design
False-positive report probability
Obtain correlation coefficients and their variance-covariances
Gene counting for haplotype analysis
Classic twin models
Internal functions for gap
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
A case-control data involving four SNPs with missing genotype
Heritability estimation according to twin correlations
Crohn's disease data
Manhattan plot of p values
Bradley-Terry model for contingency table
The HLA data
A study of Alzheimer's disease with eight SNPs and APOE
Haplotype reconstruction
Gene counting for haplotype analysis
Probability of familial clustering of disease
Quantile-comparison plots
APOE/APOC1 markers and Alzheimer's
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
Sample size calculation for mediation analysis
genomic control
Sample size for family-based linkage and association design
Power for case-control association design
Probability of familial clustering of disease
Means and variances under 1- and 2- locus (biallelic) QTL model
Meta-analysis of p values
Haplotype frequency estimation based on a genotype table of two multiallelic markers
Score statistics for association of traits with haplotypes
Print a hap.score object
Genetic analysis package
Plot haplotype frequencies versus haplotype score statistics
A utility function to read ms output
A study of Parkinson's disease and MAO gene
An example data for Manhattan plot
Permutation tests using GENECOUNTING
Statistics for 2 by K table
Example data for association plot
Functions for single nucleotide polymorphisms (SNPs)
Effect-size plot
Kinship coefficient and genetic index of familiality
Q-Q plot for uniformly distributed random variable
Multivariate meta-analysis based on generalized least squares
Gene counting for haplotype analysis
Converting pedigree(s) to dot file(s)
Haplotype trend regression
Whittemore-Halpern scores for allele-sharing