gap (version 1.1-1)

plot.hap.score: Plot haplotype frequencies versus haplotype score statistics

Description

Method function to plot a class of type hap.score

Usage

## S3 method for class 'hap.score':
plot(x, ...)

Arguments

x

The object returned from hap.score (which has class hap.score).

...

Optional arguments

Value

• Nothing is returned.

References

Schaid DJ, Rowland CM, Tines DE, Jacobson RM, Poland GA (2002) Score tests for association of traits with haplotypes when linkage phase is ambiguous. Amer J Hum Genet 70:425-34

Details

This is a plot method function used to plot haplotype frequencies on the x-axis and haplotype-specific scores on the y-axis. Because hap.score is a class, the generic plot function can be used, which in turn calls this plot.hap.score function.

See Also

hap.score

Examples

save <- hap.score(y, geno, trait.type = "gaussian")

# Example illustrating generic plot function:
plot(save)

# Example illustrating specific method plot function:
plot.hap.score(save)