A case-control data involving four SNPs with missing genotype
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
multiple imputation analysis for hap
Kinship coefficient and genetic index of familiality
Statistics for 2 by K table
Probability of familial clustering of disease
Quantile-comparison plots
Multivariate meta-analysis based on generalized least squares
Manhattan plot
Manhattan plot with annotations
Chow's test for heterogeneity in two regressions
Obtain correlation coefficients and their variance-covariances
Meta-analysis of p values
A study of Parkinson's disease and MAO gene
Q-Q plot for uniformly distributed random variable
Hardy-Weinberg equlibrium test for a multiallelic marker
An example pedigree data
Haplotype trend regression
Plot haplotype frequencies versus haplotype score statistics
score statistics for testing genetic linkage of quantitative trait
Cystic fibrosis data
A study of Parkinson's disease and APOE, LRRK2, SNCA makers
LD statistics for two diallelic markers
Classic twin models
APOE/APOC1 markers and Alzheimer's
Probability of familial clustering of disease
Power for case-control association design
A utility function to read ms output
Gene counting for haplotype analysis
Sample size for family-based linkage and association design
genomic control
Friedreich Ataxia data
Means and variances under 1- and 2- locus (biallelic) QTL model
The HLA data
Print a hap.score object
Power for population-based association design
Whittemore-Halpern scores for allele-sharing
Converting pedigree(s) to dot file(s)
genomic control based on p values
Internal functions for gap
Effect-size plot
Test/Power calculation for mediating effect
An example data for Manhattan plot with annotation
kinship matrix for simple pedigree
Gene counting for haplotype analysis
Fixed and random effects model for meta-analysis
Hardy-Weinberg equilibrium test using MCMC
An example pedigree
Example data for association plot
Transmission/disequilibrium test of a multiallelic marker
LD statistics for two multiallelic markers
Bradley-Terry model for contingency table
Regional association plot
ALDH2 markers and Alcoholism
Genetic analysis package
Haplotype frequency estimation based on a genotype table of two multiallelic markers
Example data for ACEnucfam
Preparing weight for GENECOUNTING
Score statistics for association of traits with haplotypes
Heritability estimation according to twin correlations
An example data for Manhattan plot
AE model using nuclear family trios
A study of Alzheimer's disease with eight SNPs and APOE
Power and sample size for case-cohort design
Crohn's disease data
Permutation tests using GENECOUNTING
Functions for single nucleotide polymorphisms (SNPs)
A function to prepare pedigrees in post-MAKEPED format
Gene counting for haplotype analysis
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
False-positive report probability
Bayesian false-discovery probability
Haplotype reconstruction
Sample size calculation for mediation analysis
Power calculation for two-stage case-control design