A pedigree data on 282 animals deriving from two generations
Score statistics for association of traits with haplotypes
A study of Parkinson's disease and MAO gene
Manhattan plot
Bradley-Terry model for contingency table
Test/Power calculation for mediating effect
Effect-size plot
Genetic analysis package
Kinship coefficient and genetic index of familiality
An example data for Manhattan plot with annotation
An example pedigree data
multiple imputation analysis for hap
AE model using nuclear family trios
Probability of familial clustering of disease
A function to prepare pedigrees in post-MAKEPED format
kinship matrix for simple pedigree
Quantile-comparison plots
Fixed and random effects model for meta-analysis
Power for population-based association design
Haplotype trend regression
Means and variances under 1- and 2- locus (biallelic) QTL model
Chow's test for heterogeneity in two regressions
Bayesian false-discovery probability
A case-control data involving four SNPs with missing genotype
ALDH2 markers and Alcoholism
Manhattan plot with annotations
Heritability estimation according to twin correlations
score statistics for testing genetic linkage of quantitative trait
Regional association plot
Mixed modeling with genetic relationship matrices
Power for case-control association design
Cystic fibrosis data
Hardy-Weinberg equlibrium test for a multiallelic marker
Example data for association plot
Functions for single nucleotide polymorphisms (SNPs)
genomic control based on p values
Q-Q plot for uniformly distributed random variable
False-positive report probability
Whittemore-Halpern scores for allele-sharing
The HLA data
Haplotype reconstruction
An example pedigree
Internal functions for gap
Obtain correlation coefficients and their variance-covariances
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
LD statistics for two diallelic markers
Plot haplotype frequencies versus haplotype score statistics
Converting pedigree(s) to dot file(s)
A utility function to read ms output
Transmission/disequilibrium test of a multiallelic marker
An example data for Manhattan plot
Meta-analysis of p values
Print a hap.score object
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
Sample size calculation for mediation analysis
Sample size for family-based linkage and association design
Gene counting for haplotype analysis
Gene counting for haplotype analysis
Hardy-Weinberg equilibrium test using MCMC
Power calculation for two-stage case-control design
LD statistics for two multiallelic markers
Friedreich Ataxia data
Gene counting for haplotype analysis
Probability of familial clustering of disease
genomic control
Power and sample size for case-cohort design
Permutation tests using GENECOUNTING
Preparing weight for GENECOUNTING
Example data for ACEnucfam
Multivariate meta-analysis based on generalized least squares
APOE/APOC1 markers and Alzheimer's
A study of Parkinson's disease and APOE, LRRK2, SNCA makers
Haplotype frequency estimation based on a genotype table of two multiallelic markers
Crohn's disease data
Classic twin models
Statistics for 2 by K table
A study of Alzheimer's disease with eight SNPs and APOE