Example data for association plot
Effect-size plot
AE model using nuclear family trios
Bayesian false-discovery probability
A study of Parkinson's disease and APOE, LRRK2, SNCA makers
Functions for single nucleotide polymorphisms (SNPs)
False-positive report probability
LD statistics for two diallelic markers
LD statistics for two multiallelic markers
Mixed modeling with genetic relationship matrices
Obtain correlation coefficients and their variance-covariances
Bradley-Terry model for contingency table
Power and sample size for case-cohort design
Cystic fibrosis data
Gene counting for haplotype analysis
genomic control
The HLA data
APOE/APOC1 markers and Alzheimer's
Regional association plot
Sample size for family-based linkage and association design
Internal functions for gap
Genetic analysis package
Haplotype trend regression
An example data for Manhattan plot with annotation
kinship matrix for simple pedigree
Haplotype frequency estimation based on a genotype table of two multiallelic markers
Chow's test for heterogeneity in two regressions
score statistics for testing genetic linkage of quantitative trait
Permutation tests using GENECOUNTING
Example data for ACEnucfam
An example data for Manhattan plot
Power for population-based association design
genomic control based on p values
Test/Power calculation for mediating effect
ALDH2 markers and Alcoholism
Crohn's disease data
Heritability estimation according to twin correlations
Haplotype reconstruction
An example pedigree data
An example pedigree
Hardy-Weinberg equlibrium test for a multiallelic marker
Gene counting for haplotype analysis
Kinship coefficient and genetic index of familiality
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
Hardy-Weinberg equilibrium test using MCMC
Probability of familial clustering of disease
Preparing weight for GENECOUNTING
Manhattan plot
Manhattan plot with annotations
Friedreich Ataxia data
Gene counting for haplotype analysis
Score statistics for association of traits with haplotypes
Sample size calculation for mediation analysis
multiple imputation analysis for hap
Transmission/disequilibrium test of a multiallelic marker
Meta-analysis of p values
Fixed and random effects model for meta-analysis
A pedigree data on 282 animals deriving from two generations
Plot haplotype frequencies versus haplotype score statistics
Print a hap.score object
Multivariate meta-analysis based on generalized least squares
A study of Alzheimer's disease with eight SNPs and APOE
A utility function to read ms output
Power for case-control association design
A case-control data involving four SNPs with missing genotype
A function to prepare pedigrees in post-MAKEPED format
A study of Parkinson's disease and MAO gene
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
Converting pedigree(s) to dot file(s)
Probability of familial clustering of disease
Power calculation for two-stage case-control design
Whittemore-Halpern scores for allele-sharing
Statistics for 2 by K table
Means and variances under 1- and 2- locus (biallelic) QTL model
Quantile-comparison plots
Q-Q plot for uniformly distributed random variable