Friedreich Ataxia data
Sample size for family-based linkage and association design
Gene counting for haplotype analysis
Effect-size plot
Classic twin models
A study of Parkinson's disease and SNCA makers
Example data for association plot
Genetic analysis package
Score statistics for association of traits with haplotypes
Haplotype frequency estimation based on a genotype table of two multiallelic markers
Hardy-Weinberg equlibrium test for a multiallelic marker
Power calculation for two-stage case-control design
False-positive report probability
Crohn's disease data
Heritability estimation according to twin correlations
genomic control
A study of Alzheimer's disease with eight SNPs and APOE
Power for case-control association design
Whittemore-Halpern scores for allele-sharing
LD statistics for two multiallelic markers
Bradley-Terry model for contingency table
Meta-analysis of p values
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
An example data for Manhattan plot
Haplotype reconstruction
Q-Q plot for uniformly distributed random variable
A utility function to read ms output
Cystic fibrosis data
Power and sample size for case-cohort design
Chow's test for heterogeneity in two regressions
Gene counting for haplotype analysis
Haplotype trend regression
Sample size calculation for mediation analysis
Power for population-based association design
Multivariate meta-analysis based on generalized least squares
A case-control data involving four SNPs with missing genotype
Statistics for 2 by K table
Permutation tests using GENECOUNTING
score statistics for testing genetic linkage of quantitative trait
Fixed and random effects model for meta-analysis
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
kinship matrix for simple pedigree
genomic control based on p values
The HLA data
Functions for single nucleotide polymorphisms (SNPs)
A function to prepare pedigrees in post-MAKEPED format
Quantile-comparison plots
Probability of familial clustering of disease
LD statistics for two diallelic markers
APOE/APOC1 markers and Alzheimer's
Preparing weight for GENECOUNTING
An example pedigree
Probability of familial clustering of disease
Hardy-Weinberg equilibrium test using MCMC
Obtain correlation coefficients and their variance-covariances
Test/Power calculation for mediating effect
A study of Parkinson's disease and MAO gene
Means and variances under 1- and 2- locus (biallelic) QTL model
Converting pedigree(s) to dot file(s)
Transmission/disequilibrium test of a multiallelic marker
Manhattan plot of p values
Plot haplotype frequencies versus haplotype score statistics
Bayesian false-discovery probability
Internal functions for gap
Kinship coefficient and genetic index of familiality
Gene counting for haplotype analysis
ALDH2 markers and Alcoholism
Regional association plot
Print a hap.score object
multiple imputation analysis for hap