Mixed modeling with genetic relationship matrices
A study of Parkinson's disease and APOE, LRRK2, SNCA makers
AE model using nuclear family trios
LD statistics for two diallelic markers
Bayesian false-discovery probability
Test/Power calculation for mediating effect
Power and sample size for case-cohort design
LD statistics for two multiallelic markers
score statistics for testing genetic linkage of quantitative trait
Effect-size plot
Crohn's disease data
Regional association plot
False-positive report probability
Cystic fibrosis data
Functions for single nucleotide polymorphisms (SNPs)
APOE/APOC1 markers and Alzheimer's
ALDH2 markers and Alcoholism
genomic control
Permutation tests using GENECOUNTING
Chow's test for heterogeneity in two regressions
A case-control data involving four SNPs with missing genotype
Obtain correlation coefficients and their variance-covariances
Friedreich Ataxia data
Bradley-Terry model for contingency table
Internal functions for gap
Gene counting for haplotype analysis
Sample size for family-based linkage and association design
genomic control based on p values
Haplotype reconstruction
Score statistics for association of traits with haplotypes
Gene counting for haplotype analysis
The HLA data
Genetic analysis package
Gene counting for haplotype analysis
Kinship coefficient and genetic index of familiality
Haplotype trend regression
Heritability estimation according to twin correlations
Hardy-Weinberg equlibrium test for a multiallelic marker
An example pedigree data
Sample size calculation for mediation analysis
An example pedigree
Meta-analysis of p values
Q-Q plot for uniformly distributed random variable
A utility function to read ms output
Manhattan plot with annotations
A function to prepare pedigrees in post-MAKEPED format
multiple imputation analysis for hap
A study of Parkinson's disease and MAO gene
Transmission/disequilibrium test of a multiallelic marker
Means and variances under 1- and 2- locus (biallelic) QTL model
Multivariate meta-analysis based on generalized least squares
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
Print a hap.score object
Power for case-control association design
Quantile-comparison plots
Converting pedigree(s) to dot file(s)
Whittemore-Halpern scores for allele-sharing
Haplotype frequency estimation based on a genotype table of two multiallelic markers
Fixed and random effects model for meta-analysis
A study of Alzheimer's disease with eight SNPs and APOE
Power for population-based association design
A pedigree data on 282 animals deriving from two generations
Preparing weight for GENECOUNTING
Example data for ACEnucfam
Plot haplotype frequencies versus haplotype score statistics
Statistics for 2 by K table
Manhattan plot
Probability of familial clustering of disease
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
Probability of familial clustering of disease
Hardy-Weinberg equilibrium test using MCMC
Power calculation for two-stage case-control design
kinship matrix for simple pedigree