Internal functions for gap
Haplotype reconstruction
Sample size for family-based linkage and association design
Permutation tests using GENECOUNTING
Gene counting for haplotype analysis
An example pedigree
Transmission/disequilibrium test of a multiallelic marker
Haplotype trend regression
An example pedigree data
Regional association plot
LD statistics for two multiallelic markers
score statistics for testing genetic linkage of quantitative trait
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
Gene counting for haplotype analysis
Hardy-Weinberg equlibrium test for a multiallelic marker
Obtain correlation coefficients and their variance-covariances
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
Preparing weight for GENECOUNTING
Gene counting for haplotype analysis
Hardy-Weinberg equilibrium test using MCMC
Crohn's disease data
A function to prepare pedigrees in post-MAKEPED format
Fixed and random effects model for meta-analysis
Kinship coefficient and genetic index of familiality
Manhattan plot with annotations
A study of Parkinson's disease and MAO gene
Heritability estimation according to twin correlations
kinship matrix for simple pedigree
genomic control
Haplotype frequency estimation based on a genotype table of two multiallelic markers
genomic control based on p values
Sample size calculation for mediation analysis
The HLA data
Score statistics for association of traits with haplotypes
Plot haplotype frequencies versus haplotype score statistics
Meta-analysis of p values
A pedigree data on 282 animals deriving from two generations
Statistics for 2 by K table
Means and variances under 1- and 2- locus (biallelic) QTL model
A study of Alzheimer's disease with eight SNPs and APOE
multiple imputation analysis for hap
Power for case-control association design
Example data for ACEnucfam
Print a hap.score object
Q-Q plot for uniformly distributed random variable
Quantile-comparison plots
Whittemore-Halpern scores for allele-sharing
Power for population-based association design
Multivariate meta-analysis based on generalized least squares
Converting pedigree(s) to dot file(s)
A utility function to read ms output
Manhattan plot
Power calculation for two-stage case-control design
Probability of familial clustering of disease
Probability of familial clustering of disease
Functions for single nucleotide polymorphisms (SNPs)
Effect-size plot
Mixed modeling with genetic relationship matrices
LD statistics for two diallelic markers
A study of Parkinson's disease and APOE, LRRK2, SNCA makers
Test/Power calculation for mediating effect
AE model using nuclear family trios
False-positive report probability
Bayesian false-discovery probability
Chow's test for heterogeneity in two regressions
Cystic fibrosis data
APOE/APOC1 markers and Alzheimer's
ALDH2 markers and Alcoholism
A case-control data involving four SNPs with missing genotype
Power and sample size for case-cohort design
Bradley-Terry model for contingency table
Friedreich Ataxia data
Genetic analysis package