Regional association plot
APOE/APOC1 markers and Alzheimer's
Sample size for family-based linkage and association design
genomic control
Hardy-Weinberg equlibrium test for a multiallelic marker
Means and variances under 1- and 2- locus (biallelic) QTL model
Effect-size plot
Genetic analysis package
LD statistics for two multiallelic markers
A case-control data involving four SNPs with missing genotype
Score statistics for association of traits with haplotypes
The HLA data
Test/Power calculation for mediating effect
Cystic fibrosis data
Haplotype reconstruction
Gene counting for haplotype analysis
An example pedigree
Meta-analysis of p values
Statistics for 2 by K table
Power for population-based association design
A utility function to read ms output
Probability of familial clustering of disease
Q-Q plot for uniformly distributed random variable
Whittemore-Halpern scores for allele-sharing
Power for case-control association design
Transmission/disequilibrium test of a multiallelic marker
Obtain correlation coefficients and their variance-covariances
Functions for single nucleotide polymorphisms (SNPs)
Gene counting for haplotype analysis
Sample size calculation for mediation analysis
Kinship coefficient and genetic index of familiality
score statistics for testing genetic linkage of quantitative trait
An example data for Manhattan plot
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
Preparing weight for GENECOUNTING
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
Haplotype trend regression
Multivariate meta-analysis based on generalized least squares
Example data for association plot
kinship matrix for simple pedigree
Permutation tests using GENECOUNTING
Manhattan plot of p values
Power and sample size for case-cohort design
A study of Parkinson's disease and APOE, LRRK2, SNCA makers
Heritability estimation according to twin correlations
Gene counting for haplotype analysis
Probability of familial clustering of disease
A study of Alzheimer's disease with eight SNPs and APOE
Plot haplotype frequencies versus haplotype score statistics
Internal functions for gap
Classic twin models
Hardy-Weinberg equilibrium test using MCMC
Quantile-comparison plots
Print a hap.score object
LD statistics for two diallelic markers
Bayesian false-discovery probability
Bradley-Terry model for contingency table
Chow's test for heterogeneity in two regressions
ALDH2 markers and Alcoholism
multiple imputation analysis for hap
genomic control based on p values
Power calculation for two-stage case-control design
False-positive report probability
Friedreich Ataxia data
Haplotype frequency estimation based on a genotype table of two multiallelic markers
A study of Parkinson's disease and MAO gene
Crohn's disease data
Fixed and random effects model for meta-analysis
Converting pedigree(s) to dot file(s)
A function to prepare pedigrees in post-MAKEPED format