A study of Parkinson's disease and APOE, LRRK2, SNCA makers
Hardy-Weinberg equlibrium test for a multiallelic marker
Power for population-based association design
Power for case-control association design
False-positive report probability
Obtain correlation coefficients and their variance-covariances
Regional association plot
Crohn's disease data
Gene counting for haplotype analysis
Power and sample size for case-cohort design
score statistics for testing genetic linkage of quantitative trait
An example pedigree
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
Meta-analysis of p values
Functions for single nucleotide polymorphisms (SNPs)
Permutation tests using GENECOUNTING
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
A study of Parkinson's disease and MAO gene
Haplotype reconstruction
An example data for Manhattan plot
Score statistics for association of traits with haplotypes
Plot haplotype frequencies versus haplotype score statistics
Sample size calculation for mediation analysis
Test/Power calculation for mediating effect
Means and variances under 1- and 2- locus (biallelic) QTL model
Q-Q plot for uniformly distributed random variable
Hardy-Weinberg equilibrium test using MCMC
Heritability estimation according to twin correlations
Whittemore-Halpern scores for allele-sharing
Bradley-Terry model for contingency table
Classic twin models
genomic control
Transmission/disequilibrium test of a multiallelic marker
Power calculation for two-stage case-control design
LD statistics for two diallelic markers
APOE/APOC1 markers and Alzheimer's
Cystic fibrosis data
Gene counting for haplotype analysis
Probability of familial clustering of disease
Multivariate meta-analysis based on generalized least squares
Genetic analysis package
Gene counting for haplotype analysis
Probability of familial clustering of disease
genomic control based on p values
The HLA data
multiple imputation analysis for hap
A function to prepare pedigrees in post-MAKEPED format
Example data for association plot
Effect-size plot
Bayesian false-discovery probability
Sample size for family-based linkage and association design
Internal functions for gap
Haplotype trend regression
Manhattan plot of p values
Haplotype frequency estimation based on a genotype table of two multiallelic markers
Statistics for 2 by K table
A case-control data involving four SNPs with missing genotype
Print a hap.score object
Fixed and random effects model for meta-analysis
Preparing weight for GENECOUNTING
ALDH2 markers and Alcoholism
LD statistics for two multiallelic markers
Friedreich Ataxia data
Kinship coefficient and genetic index of familiality
kinship matrix for simple pedigree
A utility function to read ms output
Chow's test for heterogeneity in two regressions
Converting pedigree(s) to dot file(s)
A study of Alzheimer's disease with eight SNPs and APOE
Quantile-comparison plots