LD statistics for two multiallelic markers
A case-control data involving four SNPs with missing genotype
Permutation tests using GENECOUNTING
genomic control
Means and variances under 1- and 2- locus (biallelic) QTL model
Effect-size plot
Bradley-Terry model for contingency table
Haplotype reconstruction
Haplotype trend regression
A study of Alzheimer's disease with eight SNPs and APOE
A function to prepare pedigrees in post-MAKEPED format
Gene counting for haplotype analysis
Whittemore-Halpern scores for allele-sharing
Obtain correlation coefficients and their variance-covariances
Gene counting for haplotype analysis
Hardy-Weinberg equlibrium test for a multiallelic marker
An example pedigree
An example data for Manhattan plot
Haplotype frequency estimation based on a genotype table of two multiallelic markers
Plot haplotype frequencies versus haplotype score statistics
Multivariate meta-analysis based on generalized least squares
Converting pedigree(s) to dot file(s)
Probability of familial clustering of disease
False-positive report probability
Classic twin models
Crohn's disease data
A study of Parkinson's disease and MAO gene
Bayesian false-discovery probability
Functions for single nucleotide polymorphisms (SNPs)
Genetic analysis package
Internal functions for gap
APOE/APOC1 markers and Alzheimer's
Chow's test for heterogeneity in two regressions
score statistics for testing genetic linkage of quantitative trait
Power for case-control association design
Print a hap.score object
The HLA data
ALDH2 markers and Alcoholism
Manhattan plot
Manhattan plot with annotations
Power for population-based association design
Probability of familial clustering of disease
Score statistics for association of traits with haplotypes
Example data for association plot
AE model using nuclear family trios
Friedreich Ataxia data
Test/Power calculation for mediating effect
Kinship coefficient and genetic index of familiality
Cystic fibrosis data
Heritability estimation according to twin correlations
Meta-analysis of p values
multiple imputation analysis for hap
Power and sample size for case-cohort design
Sample size for family-based linkage and association design
kinship matrix for simple pedigree
Power calculation for two-stage case-control design
An example pedigree data
Statistics for 2 by K table
Hardy-Weinberg equilibrium test using MCMC
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
Transmission/disequilibrium test of a multiallelic marker
Example data for ACEnucfam
Preparing weight for GENECOUNTING
Regional association plot
LD statistics for two diallelic markers
genomic control based on p values
Quantile-comparison plots
Q-Q plot for uniformly distributed random variable
A utility function to read ms output
A study of Parkinson's disease and APOE, LRRK2, SNCA makers
Gene counting for haplotype analysis
An example data for Manhattan plot with annotation
Sample size calculation for mediation analysis
Fixed and random effects model for meta-analysis
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model