Converting pedigree(s) to dot file(s)
LD statistics for two diallelic markers
Crohn's disease data
LD statistics for two multiallelic markers
Bayesian false-discovery probability
genomic control
Haplotype trend regression
A function to prepare pedigrees in post-MAKEPED format
Functions for single nucleotide polymorphisms (SNPs)
An example data for Manhattan plot
A case-control data involving four SNPs with missing genotype
Heritability estimation according to twin correlations
Transmission/disequilibrium test of a multiallelic marker
False-positive report probability
ALDH2 markers and Alcoholism
Friedreich Ataxia data
Internal functions for gap
Means and variances under 1- and 2- locus (biallelic) QTL model
Haplotype reconstruction
An example pedigree data
Score statistics for association of traits with haplotypes
A utility function to read ms output
Permutation tests using GENECOUNTING
Sample size for family-based linkage and association design
Haplotype frequency estimation based on a genotype table of two multiallelic markers
Power calculation for two-stage case-control design
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
Manhattan plot
Effect-size plot
Sample size calculation for mediation analysis
Multivariate meta-analysis based on generalized least squares
Plot haplotype frequencies versus haplotype score statistics
A study of Parkinson's disease and MAO gene
Meta-analysis of p values
Kinship coefficient and genetic index of familiality
AE model using nuclear family trios
APOE/APOC1 markers and Alzheimer's
Obtain correlation coefficients and their variance-covariances
The HLA data
Genetic analysis package
Power and sample size for case-cohort design
Whittemore-Halpern scores for allele-sharing
Example data for association plot
genomic control based on p values
score statistics for testing genetic linkage of quantitative trait
kinship matrix for simple pedigree
Hardy-Weinberg equilibrium test using MCMC
Example data for ACEnucfam
Gene counting for haplotype analysis
Test/Power calculation for mediating effect
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
Hardy-Weinberg equlibrium test for a multiallelic marker
An example pedigree
Regional association plot
Classic twin models
Quantile-comparison plots
multiple imputation analysis for hap
A study of Parkinson's disease and APOE, LRRK2, SNCA makers
Probability of familial clustering of disease
Gene counting for haplotype analysis
A study of Alzheimer's disease with eight SNPs and APOE
Chow's test for heterogeneity in two regressions
Fixed and random effects model for meta-analysis
Statistics for 2 by K table
An example data for Manhattan plot with annotation
Print a hap.score object
Power for case-control association design
Bradley-Terry model for contingency table
Cystic fibrosis data
Manhattan plot with annotations
Gene counting for haplotype analysis
Preparing weight for GENECOUNTING
Probability of familial clustering of disease
Q-Q plot for uniformly distributed random variable
Power for population-based association design