Test/Power calculation for mediating effect
forest plot as R/meta's forest for METAL outputs
AE model using nuclear family trios
Mixed modeling with genetic relationship matrices
Effect-size plot
LD statistics for two multiallelic markers
LD statistics for two diallelic markers
Bayesian false-discovery probability
Functions for single nucleotide polymorphisms (SNPs)
False-positive report probability
Chow's test for heterogeneity in two regressions
Heritability estimation based on genomic relationship matrix using JAGS
score statistics for testing genetic linkage of quantitative trait
Haplotype reconstruction
Sample size for family-based linkage and association design
Hardy-Weinberg equlibrium test for a multiallelic marker
Gene counting for haplotype analysis
Haplotype trend regression
Score statistics for association of traits with haplotypes
Internal functions for gap
A likelihood ratio test of population Hardy-Weinberg equilibrium for case-control studies
Regional association plot
Obtain correlation coefficients and their variance-covariances
Kinship coefficient and genetic index of familiality
Bradley-Terry model for contingency table
Means and variances under 1- and 2- locus (biallelic) QTL model
Transmission/disequilibrium test of a multiallelic marker by Bradley-Terry model
Hardy-Weinberg equilibrium test using MCMC
Probability of familial clustering of disease
Probability of familial clustering of disease
Heritability estimation according to twin correlations
Meta-analysis of p values
Truncated Manhattan plot
Sample size calculation for mediation analysis
Power and sample size for case-cohort design
genomic control
Transmission/disequilibrium test of a multiallelic marker
Plot haplotype frequencies versus haplotype score statistics
multiple imputation analysis for hap
Preparing weight for GENECOUNTING
genomic control based on p values
Power for case-control association design
Converting pedigree(s) to dot file(s)
Manhattan plot with annotations
kinship matrix for simple pedigree
Hardy-Weinberg equlibrium test for a multiallelic marker using JAGS
Genetic analysis package
Fixed and random effects model for meta-analysis
Manhattan plot
Gene counting for haplotype analysis
Permutation tests using GENECOUNTING
Gene counting for haplotype analysis
Haplotype frequency estimation based on a genotype table of two multiallelic markers
A function to prepare pedigrees in post-MAKEPED format
Print a hap.score object
Multivariate meta-analysis based on generalized least squares
Quantile-comparison plots
Power calculation for two-stage case-control design
Whittemore-Halpern scores for allele-sharing
Power for population-based association design
Q-Q plot for uniformly distributed random variable
A utility function to read ms output
Statistics for 2 by K table
Sentinel identification from GWAS summary statistics