chr_pos_a1_a2

This function generates unique identifiers for variants

As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18.
<doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it contains functions for
sample size calculations of both population-based and family-based designs, probability
of familial disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype analysis with or
without environmental covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).

Jing Zhao

Genetic Analysis Package

Jing Hua Zhao

Kurt Hornik

Brian Ripley

Uwe Liggs

Achim Zeileis

chr_pos_a1_a2 function

<dl><dt>chr</dt>
<dd>Chromosome.</dd>
<dt>pos</dt>
<dd>Position.</dd>
<dt>a1</dt>
<dd>Allele 1.</dd>
<dt>a2</dt>
<dd>Allele 2.</dd>
<dt>prefix</dt>
<dd>Prefix of the identifier.</dd>
<dt>seps</dt>
<dd>Delimiters.</dd>
<dt>uppercase</dt>
<dd>A flag to return in upper case.</dd></dl>

Arguments

SNP id by chr:pos+a1/a2 — chr_pos_a1_a2

<dl>

<dt>chr</dt>
<dd>Chromosome.</dd>


<dt>pos</dt>
<dd>Position.</dd>


<dt>a1</dt>
<dd>Allele 1.</dd>


<dt>a2</dt>
<dd>Allele 2.</dd>


<dt>prefix</dt>
<dd>Prefix of the identifier.</dd>


<dt>seps</dt>
<dd>Delimiters.</dd>


<dt>uppercase</dt>
<dd>A flag to return in upper case.</dd>

</dl>

chr_pos_a1_a2: SNP id by chr:pos+a1/a2

Description

Usage

Value

Arguments