sample_tcga


a multivariate table obtained from the integrated pathway analysis of gastric cancer from the Cancer Genome Atlas (TCGA) study.
In this data set, each column represents a pathway consisting of a set of genes and each row represents a cohort of samples based 
on specific clinical or genetic features. For each pair of a pathway and a feature, a continuous value of between 1 and -1 is 
assigned to score positive or negative association, respectively.


datasets

The gap encodes the distance between clusters and improves
interpretation of cluster heatmaps. The gaps can be of the same
distance based on a height threshold to cut the dendrogram. Another
option is to vary the size of gaps based on the distance between
clusters.

Ryo Sakai

gapmap

Functions for Drawing Gapped Cluster Heatmap with ggplot2

sample_tcga function

A data frame with 215 rows and 117 variables

sample_tcga: Sample data matrix from the integrated pathway analysis of gastric cancer from the Cancer Genome Atlas (TCGA) study.

Description

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Details