gaston (version 1.4.9)

TTN: TTN data set

Description

These data have been extracted from the 1000 Genomes data. The data set contains the genotype matrix TTN.gen, the pedigree matrix TTN.fam and a matrix TTN.bim, corresponding to 503 individuals of European populations and 733 SNPs on chromosome 2, on a ~600kb segment containing the Titin gene. There is also a factor TTN.pop, which gives the population from which each individual is drawn (CEU = Utah residents of Northern Western European ancestry, FIN = Finnish, GBR = England and Scottland, IBS = Iberian, TSI = Toscani).

Usage

data(TTN)

Format

There are three data objects in the dataset:

Source

The data were obtained from the 1000 Genomes project (see http://www.1000genomes.org/).

References

McVean et al, 2012, An integrated map of genetic variation from 1,092 human genomes, Nature 491, 56-65 doi:10.1038/nature11632

Examples

data(TTN)
x <- as.bed.matrix(TTN.gen, TTN.fam, TTN.bim)
x