example_design_tidy

Wells A1...A8 through F1...F8 contain 48 different
simulated bacterial strains growing alone. Wells G1...G8 through L1...L8
contain the same 48 bacterial strains in an identical layout, but this
time growing in the presence of a phage

datasets

Easy wrangling and model-free analysis of
microbial growth curve data, as commonly output by plate readers.
Tools for reshaping common plate reader outputs into 'tidy' formats and
merging them with design information, making data easy to work with using
'gcplyr' and other packages. Also streamlines common growth curve
processing steps, like smoothing and calculating derivatives, and
facilitates model-free characterization and analysis of growth data.
See methods at <https://mikeblazanin.github.io/gcplyr/>.

Mike Blazanin

gcplyr

Wrangle and Analyze Growth Curve Data

example_design_tidy function

A dataframe with 96 rows and 3 variables:<dl>
 <dt>Well</dt>
<dd>The well of the plate</dd> <dt>Bacteria_strain</dt>
<dd>The numbered bacterial strain growing in each well</dd> <dt>Phage</dt>
<dd>Whether or not the bacteria were simulated growing with phages</dd> 
</dl>

Format

Design for example growth curve data
 
A tidy-shaped dataset with the experimental design (i.e. plate layout)
for the example data included with gcplyr. — example_design_tidy

A dataframe with 96 rows and 3 variables:<dl>
 <dt>Well</dt>
<dd>The well of the plate</dd>

 <dt>Bacteria_strain</dt>
<dd>The numbered bacterial strain growing in each well</dd>

 <dt>Phage</dt>
<dd>Whether or not the bacteria were simulated growing with phages</dd>

 
</dl>

Design for example growth curve data
 
A tidy-shaped dataset with the experimental design (i.e. plate layout)
for the example data included with <code>gcplyr</code>.

example_design_tidy: Design for example growth curve data A tidy-shaped dataset with the experimental design (i.e. plate layout) for the example data included with `gcplyr`.

Description

Usage

Arguments

Format