RDocumentation
Moon
Learn R
Search all packages and functions
⚠️
There's a newer version (1.5.0-9.1) of this package.
Take me there.
gdm (version 1.3.11)
Generalized Dissimilarity Modeling
Description
A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models.
Copy Link
Copy
Link to current version
Version
Version
1.5.0-9.1
1.5.0-3
1.5.0-1
1.5.0
1.4.2.2
1.4.2.1
1.4.2
1.4.1
1.4
1.3.11
1.3.10
1.3.3
1.3.2
1.3.0
1.2.3
1.2.2
1.2.0
1.1.7
1.1.6
1.1.5
1.1.4
1.1.3
1.1.2
1.1.1
1.0
Down Chevron
Install
install.packages('gdm')
Monthly Downloads
763
Version
1.3.11
License
GPL-2
Maintainer
Matthew Fitzpatrick
Last Published
June 5th, 2018
Functions in gdm (1.3.11)
Search functions
gdm-package
Overview of the functions in the gdm package
gdm.transform
Transform Environmental Data Using a Generalized Dissimilarity Model
gdm
Fit a Generalized Dissimilarity Model to Tabular Site-Pair Data
gdm.varImp
Quantify model significance and variable importance/significance in gdm using matrix permutation.
createsitepair
Creates Site-Pair Table
isplineExtract
Extract I-spline Values From a gdm Object.
formatsitepair
Converts Common Biological (Response) and Environmental (Predictor) Data Formats to a GDM Site-Pair Table
summary.gdm
Summarize a Fitted Generalized Dissimilarity Model
removeSitesFromSitePair
Remove Random Sites from Site-Pair Table
permutateSitePair
Permutate Site-Pair Table Rows
gdmDissim
A sample biological dissimilarity matrix for use in GDM examples
stackedVars
Worldclim climate variables used to fit GDM in examples
plotUncertainty
Plot I-splines with error bands using bootstrapping.
predict.gdm
Predict Biological Dissimilarities Between Sites or Times Using a Generalized Dissimilarity Model
permutateVarSitePair
Permutate the Values of a Site-Pair Table Variable
plot.gdm
Plot model fit and I-splines from a generalized dissimilarity model
gdmExpData
Species and environmental data used in GDM examples