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gdm (version 1.3.11)
Generalized Dissimilarity Modeling
Description
A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models.
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Install
install.packages('gdm')
Monthly Downloads
792
Version
1.3.11
License
GPL-2
Maintainer
Matthew Fitzpatrick
Last Published
June 5th, 2018
Functions in gdm (1.3.11)
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gdm-package
Overview of the functions in the gdm package
gdm.transform
Transform Environmental Data Using a Generalized Dissimilarity Model
gdm
Fit a Generalized Dissimilarity Model to Tabular Site-Pair Data
gdm.varImp
Quantify model significance and variable importance/significance in gdm using matrix permutation.
createsitepair
Creates Site-Pair Table
isplineExtract
Extract I-spline Values From a gdm Object.
formatsitepair
Converts Common Biological (Response) and Environmental (Predictor) Data Formats to a GDM Site-Pair Table
summary.gdm
Summarize a Fitted Generalized Dissimilarity Model
removeSitesFromSitePair
Remove Random Sites from Site-Pair Table
permutateSitePair
Permutate Site-Pair Table Rows
gdmDissim
A sample biological dissimilarity matrix for use in GDM examples
stackedVars
Worldclim climate variables used to fit GDM in examples
plotUncertainty
Plot I-splines with error bands using bootstrapping.
predict.gdm
Predict Biological Dissimilarities Between Sites or Times Using a Generalized Dissimilarity Model
permutateVarSitePair
Permutate the Values of a Site-Pair Table Variable
plot.gdm
Plot model fit and I-splines from a generalized dissimilarity model
gdmExpData
Species and environmental data used in GDM examples