marioni

The experiment aims to detect differentially expressed genes in Affymetrix micro-arrays and RNA-seq data in a comparative study. For this, samples from two tissues (liver and kidney) were compared.

datasets

Use log-linear models to perform hypergeometric and
chi-squared tests for gene set enrichments for two (based on
contingency tables) or three categories (contingency cubes).
Categories can be differentially expressed genes, GO terms,
sequence length, GC content, chromosmal position, phylostrata,
....

Markus Boenn

geecc

Gene set Enrichment analysis Extended to Contingency Cubes

marioni function

A <code>data.frame</code> containing gene expression values from an Affymetrix microarray, including P-values, log2-fold changes and alternative annotations

marioni: Affymetrix microarray gene expression data

Description

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Examples