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geecc (version 1.2.0)

Gene set Enrichment analysis Extended to Contingency Cubes

Description

Use log-linear models to perform hypergeometric and chi-squared tests for gene set enrichments for two (based on contingency tables) or three categories (contingency cubes). Categories can be differentially expressed genes, GO terms, sequence length, GC content, chromosmal position, phylostrata, ....

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Version

1.2.0

License

GPL (>= 2)

Maintainer

Last Published

December 31st, 2014

Functions in geecc (1.2.0)