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geiger (version 1.0-4)

Analysis of evolutionary diversification

Description

Running macroevolutionary simulation, and estimating parameters related to diversification from comparative phylogenetic data.

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Version

Install

install.packages('geiger')

Monthly Downloads

4,064

Version

1.0-4

License

GPL version 2 or greater

Maintainer

Luke Harmon

Last Published

April 3rd, 2023

Functions in geiger (1.0-4)

prune.extinct.taxa

Prune specified taxa from a phylogenetic tree

birthdeath.tree

Birth-death tree simulator

dtt

Disparity-through-time

fit.continuous

Model fitting for continuous data

ic.sigma

Estimate Evolutionary VCV Matrix

area.between.curves

Area between two curves

geospiza

Data from Darwin's finches

name.check

Compares taxa in data and tree

Phylogenetic ANOVA and MANOVA

Relative cladogenesis test

ape2ouch

Convert between ape and ouch formats

fit.discrete

Model fitting for discrete comparative data

sim.char

Simulate character evolution

rate.estimate

Calculate net diversification rate with confindence limits, and test diversities

tip.disparity

Tip disparity calculation

BDsim

Birth-death population simulator