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geiger (version 1.0-7)

Analysis of evolutionary diversification

Description

Running macroevolutionary simulation, and estimating parameters related to diversification from comparative phylogenetic data.

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Version

Install

install.packages('geiger')

Monthly Downloads

5,506

Version

1.0-7

License

GPL version 2 or greater

Maintainer

Luke Harmon

Last Published

April 3rd, 2023

Functions in geiger (1.0-7)

name.check

Compares taxa in data and tree

Relative cladogenesis test

geospiza

Data from Darwin's finches

fit.continuous

Model fitting for continuous data

rate.estimate

Calculate net diversification rate with confindence limits, and test diversities

Estimate Evolutionary VCV Matrix

BDsim

Birth-death population simulator

fit.discrete

Model fitting for discrete comparative data

tip.disparity

Tip disparity calculation

prune.extinct.taxa

Prune specified taxa from a phylogenetic tree

sim.char

Simulate character evolution

birthdeath.tree

Birth-death tree simulator

dtt

Disparity-through-time

phy.anova

Phylogenetic ANOVA and MANOVA

area.between.curves

Area between two curves