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geiger (version 1.0-91)

Analysis of evolutionary diversification

Description

Running macroevolutionary simulation, and estimating parameters related to diversification from comparative phylogenetic data.

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Version

Install

install.packages('geiger')

Monthly Downloads

4,064

Version

1.0-91

License

GPL version 2 or greater

Maintainer

Luke Harmon

Last Published

April 3rd, 2023

Functions in geiger (1.0-91)

geiger-package

GEIGER
rate.estimate

Calculate net diversification rate with confindence limits, and test diversities
ic.sigma

Estimate Evolutionary VCV Matrix
tip.disparity

Tip disparity calculation
prune.extinct.taxa

Prune specified taxa from a phylogenetic tree
name.check

Compares taxa in data and tree
fit.discrete

Model fitting for discrete comparative data
birthdeath.tree

Birth-death tree simulator
BDsim

Birth-death population simulator
dtt

Disparity-through-time
ape2ouch

Convert between ape and ouch formats
rc

Relative cladogenesis test
deltaTree

Tree transformations
sim.char

Simulate character evolution
phy.anova

Phylogenetic ANOVA and MANOVA
geospiza

Data from Darwin's finches
area.between.curves

Area between two curves
fit.continuous

Model fitting for continuous data