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geiger (version 1.2-06)

Analysis of evolutionary diversification

Description

Running macroevolutionary simulation, and estimating parameters related to diversification from comparative phylogenetic data.

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Version

Install

install.packages('geiger')

Monthly Downloads

4,064

Version

1.2-06

License

GPL (>=2)

Maintainer

Luke Harmon

Last Published

April 3rd, 2023

Functions in geiger (1.2-06)

sim.char

Simulate character evolution
phy.anova

Phylogenetic ANOVA and MANOVA
ic.sigma

Estimate Evolutionary VCV Matrix
rate.estimate

Calculate net diversification rate with confindence limits, and test diversities
BDsim

Birth-death population simulator
geiger-package

GEIGER
node.leaves

Returns all descendents of a given node in your tree
area.between.curves

Area between two curves
tip.disparity

Tip disparity calculation
ape2ouch

Convert between ape and ouch formats
geospiza

Data from Darwin's finches
name.check

Compares taxa in data and tree
deltaTree

Tree transformations
rc

Relative cladogenesis test
fitDiscrete

Model fitting for discrete comparative data
fitContinuous

Model fitting for continuous data
dtt

Disparity-through-time
birthdeath.tree

Birth-death tree simulator
prune.extinct.taxa

Prune specified taxa from a phylogenetic tree