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geiger (version 1.2-13)

Analysis of evolutionary diversification

Description

Running macroevolutionary simulation, and estimating parameters related to diversification from comparative phylogenetic data.

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Version

Install

install.packages('geiger')

Monthly Downloads

4,064

Version

1.2-13

License

GPL (>=2)

Maintainer

Luke Harmon

Last Published

April 3rd, 2023

Functions in geiger (1.2-13)

ape2ouch

Convert between ape and ouch formats
area.between.curves

Area between two curves
birthdeath.tree

Birth-death tree simulator
geospiza

Data from Darwin's finches
geiger-package

GEIGER
dtt

Disparity-through-time
name.check

Compares taxa in data and tree
deltaTree

Tree transformations
fitContinuous

Model fitting for continuous data
ic.sigma

Estimate Evolutionary VCV Matrix
phy.anova

Phylogenetic ANOVA and MANOVA
prune.extinct.taxa

Prune specified taxa from a phylogenetic tree
fitDiscrete

Model fitting for discrete comparative data
sim.char

Simulate character evolution
node.leaves

Returns all descendents of a given node in your tree
rc

Relative cladogenesis test
BDsim

Birth-death population simulator
tip.disparity

Tip disparity calculation
rate.estimate

Calculate net diversification rate with confindence limits, and test diversities