.createPatternFile

Creates a search file for a command line grep search.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

.createPatternFile function

<dl><dt>bc_backbone</dt>
<dd>a character string (barcode pattern).</dd>
<dt>patterns_file</dt>
<dd>a character string (file name)</dd></dl>

Arguments

Internal function — .createPatternFile

<dl>

<dt>bc_backbone</dt>
<dd>a character string (barcode pattern).</dd>


<dt>patterns_file</dt>
<dd>a character string (file name)</dd>

</dl>

.createPatternFile: Internal function

Description

Usage

Arguments