.getBarcodeFilter

Identifies the barcode positions within the barcode backbone and generates a awk command.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

.getBarcodeFilter function

<dl><dt>wobble_pos</dt>
<dd>a character string.</dd></dl>

Arguments

Internal function — .getBarcodeFilter

<dl>

<dt>wobble_pos</dt>
<dd>a character string.</dd>

</dl>

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.getBarcodeFilter: Internal function

Description

Usage

Arguments