BCdat-class

BCdat

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

BCdat-class function

<dl>
<dt><code>reads</code></dt>
<dd>data.frame containing barcode sequences and their corresponding read counts.</dd></dl>
<dt><code>results_dir</code></dt>
<dd>character string of the working directory path.</dd>
<dt><code>label</code></dt>
<dd>character string identifying the particular experiment (will be part of the names of any file created).</dd>
<dt><code>BC_backbone</code></dt>
<dd>character string of the used barcode design (also called barcode backbone).</dd>

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BCdat class. — BCdat-class

<dl>
<dt><code>reads</code></dt>
<dd>data.frame containing barcode sequences and their corresponding read counts.</dd>


<dt><code>results_dir</code></dt>
<dd>character string of the working directory path.</dd>


<dt><code>label</code></dt>
<dd>character string identifying the particular experiment (will be part of the names of any file created).</dd>


<dt><code>BC_backbone</code></dt>
<dd>character string of the used barcode design (also called barcode backbone).</dd>


</dl>

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BCdat-class: BCdat class.

Description

Arguments

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