asBCdat

Converts a data.frame into a BCdat object.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

asBCdat function

<dl><dt>dat</dt>
<dd>a data.frame object with two columns containing read counts and barcode sequences.</dd>
<dt>label</dt>
<dd>a optional character string used as label.</dd>
<dt>BC_backbone</dt>
<dd>a optional character string, describing the barcode backbone structure.</dd>
<dt>resDir</dt>
<dd>a optional character string, identifying the path to the results directory, default is current working directory.</dd></dl>

Arguments

Data Type Conversion — asBCdat

<dl>

<dt>dat</dt>
<dd>a data.frame object with two columns containing read counts and barcode sequences.</dd>


<dt>label</dt>
<dd>a optional character string used as label.</dd>


<dt>BC_backbone</dt>
<dd>a optional character string, describing the barcode backbone structure.</dd>


<dt>resDir</dt>
<dd>a optional character string, identifying the path to the results directory, default is current working directory.</dd>

</dl>

asBCdat: Data Type Conversion

Description

Usage

Value

Arguments