error_correction_clustered_HDs

This function will create a jitter plot displaying the maximal distances within each of the barcode sequence clusters.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

error_correction_clustered_HDs function

<dl><dt>datEC</dt>
<dd>a BC_dat object, returned by the error_correction function with the EC_analysis parameter set to TRUE.</dd>
<dt>size</dt>
<dd>a numeric value, specifying the dot size.</dd></dl>

Arguments

Clustered HD Plot — error_correction_clustered_HDs

<dl>

<dt>datEC</dt>
<dd>a BC_dat object, returned by the error_correction function with the EC_analysis parameter set to TRUE.</dd>


<dt>size</dt>
<dd>a numeric value, specifying the dot size.</dd>

</dl>

error_correction_clustered_HDs: Clustered HD Plot

Description

Usage

Value

Arguments