error_correction_treePlot

creates a Tree Plot visualising of the barcode clustering as part of the error correction process.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

error_correction_treePlot function

<dl><dt>edges</dt>
<dd>a data frame containing edge definitions by two columns calles "from" and "to". Such data frame will be returned by the error_correction function with the EC_analysis parameter set to TRUE.</dd>
<dt>vertices</dt>
<dd>a data frame with at least one column containing a list of nodes (also returned by the error_correction function with the EC_analysis parameter set to TRUE)</dd></dl>

Arguments

Tree Plot — error_correction_treePlot

<dl>

<dt>edges</dt>
<dd>a data frame containing edge definitions by two columns calles "from" and "to". Such data frame will be returned by the error_correction function with the EC_analysis parameter set to TRUE.</dd>


<dt>vertices</dt>
<dd>a data frame with at least one column containing a list of nodes (also returned by the error_correction function with the EC_analysis parameter set to TRUE)</dd>

</dl>

error_correction_treePlot: Tree Plot

Description

Usage

Value

Arguments