genBaRcode_app

Launches the corresponding shiny app.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

genBaRcode_app function

<dl><dt>dat_dir</dt>
<dd>a character string, identifying the path to one or more fast(q) files which shall be analysed, default is the
path to the package inherent example fastq file</dd></dl>

Arguments

Shiny App — genBaRcode_app

<dl>

<dt>dat_dir</dt>
<dd>a character string, identifying the path to one or more fast(q) files which shall be analysed, default is the
path to the package inherent example fastq file</dd>

</dl>

genBaRcode_app: Shiny App

Description

Usage

Arguments