hybridsIdentification

Experimental function to identify hybrid barcodes which can occure due to unfinished synthesis of a template
in-between PCR cycles.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

hybridsIdentification function

<dl><dt>dat</dt>
<dd>a character vector containing barcode sequences or a BCdat object.</dd>
<dt>min_seq_length</dt>
<dd>a positive integer value indicating the minimal length of the two barcodes which give rise to a hybrid barcode.</dd></dl>

Arguments

Identifies hybrid barcodes — hybridsIdentification

<dl>

<dt>dat</dt>
<dd>a character vector containing barcode sequences or a BCdat object.</dd>


<dt>min_seq_length</dt>
<dd>a positive integer value indicating the minimal length of the two barcodes which give rise to a hybrid barcode.</dd>

</dl>

hybridsIdentification: Identifies hybrid barcodes

Description

Usage

Value

Arguments