plotNucFrequency

Creates a plot visualising the nucleotide frequency within the entire fastq file.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

plotNucFrequency function

<dl><dt>source_dir</dt>
<dd>a character string containing the path to the sequencing file.</dd>
<dt>file_name</dt>
<dd>a character string containng the name of the sequencing file.</dd></dl>

Arguments

Plotting Nucleotide Frequency — plotNucFrequency

<dl>

<dt>source_dir</dt>
<dd>a character string containing the path to the sequencing file.</dd>


<dt>file_name</dt>
<dd>a character string containng the name of the sequencing file.</dd>

</dl>

plotNucFrequency: Plotting Nucleotide Frequency

Description

Usage

Value

Arguments