plotQualityScoreDis

Creates a plot of the quality values accommodated by the fastq file.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

plotQualityScoreDis function

<dl><dt>source_dir</dt>
<dd>a character string of the path to the source directory.</dd>
<dt>file_name</dt>
<dd>a character string of the file name.</dd>
<dt>type</dt>
<dd>a character string, possible values are "mean" and "median".</dd>
<dt>rel</dt>
<dd>a logical value. If TRUE the y-axis will show relative frequency instead of the absolut counts.</dd></dl>

Arguments

Plotting Quality Score Distribution — plotQualityScoreDis

<dl>

<dt>source_dir</dt>
<dd>a character string of the path to the source directory.</dd>


<dt>file_name</dt>
<dd>a character string of the file name.</dd>


<dt>type</dt>
<dd>a character string, possible values are "mean" and "median".</dd>


<dt>rel</dt>
<dd>a logical value. If TRUE the y-axis will show relative frequency instead of the absolut counts.</dd>

</dl>

plotQualityScoreDis: Plotting Quality Score Distribution

Description

Usage

Value

Arguments

Examples