plotSeqLogo

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

plotSeqLogo function

<dl><dt>BC_dat</dt>
<dd>a chatacter vector or BCdat object containing the respective sequences</dd>
<dt>colrs</dt>
<dd>a character vector containing the desired colors for the nucleotides A, T, C, G and N (in that order)</dd></dl>

Arguments

Plots a sequence logo — plotSeqLogo

<dl>

<dt>BC_dat</dt>
<dd>a chatacter vector or BCdat object containing the respective sequences</dd>


<dt>colrs</dt>
<dd>a character vector containing the desired colors for the nucleotides A, T, C, G and N (in that order)</dd>

</dl>

plotSeqLogo: Plots a sequence logo

Description

Usage

Value

Arguments