plotVennDiagram

plotVennDiagramm will create a Venn Diagram ans is based on the VennDiagram package.
It accepts a list of BCdat objects and will return a ggplot2 output object.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

plotVennDiagram function

<dl><dt>BC_dat</dt>
<dd>a list of BCdat objects.</dd>
<dt>alpha_value</dt>
<dd>color transparency value [0-1].</dd>
<dt>colrs</dt>
<dd>a character vector containing the desired colors, if NA the colors will be chosen automatically.</dd>
<dt>border_color</dt>
<dd>a character value specifying the desired border color, if NA no border will be drawn.</dd>
<dt>plot_title</dt>
<dd>a character value.</dd>
<dt>legend_sort</dt>
<dd>a character or factor vector in case the order of legend items needs to be changed.</dd>
<dt>annotationSize</dt>
<dd>an integer value specifying the venn diagramm internal text size.</dd></dl>

Arguments

Plotting a VennDiagram — plotVennDiagram

<dl>

<dt>BC_dat</dt>
<dd>a list of BCdat objects.</dd>


<dt>alpha_value</dt>
<dd>color transparency value [0-1].</dd>


<dt>colrs</dt>
<dd>a character vector containing the desired colors, if NA the colors will be chosen automatically.</dd>


<dt>border_color</dt>
<dd>a character value specifying the desired border color, if NA no border will be drawn.</dd>


<dt>plot_title</dt>
<dd>a character value.</dd>


<dt>legend_sort</dt>
<dd>a character or factor vector in case the order of legend items needs to be changed.</dd>


<dt>annotationSize</dt>
<dd>an integer value specifying the venn diagramm internal text size.</dd>

</dl>

plotVennDiagram: Plotting a VennDiagram

Description

Usage

Value

Arguments