readBCdat

Reads a data table (csv-file) and returns a BCdat objects.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

readBCdat function

<dl><dt>path</dt>
<dd>a character string containing the path to a saved read count table (two columns containing read counts and barcode
sequences).</dd>
<dt>label</dt>
<dd>a character string containing a label of the data set.</dd>
<dt>BC_backbone</dt>
<dd>a character string containing the barcode structure information.</dd>
<dt>file_name</dt>
<dd>a character string containing the name of the file to read in.</dd>
<dt>s</dt>
<dd>a character value, identifying the column separating char.</dd></dl>

Arguments

Data Input — readBCdat

<dl>

<dt>path</dt>
<dd>a character string containing the path to a saved read count table (two columns containing read counts and barcode
sequences).</dd>


<dt>label</dt>
<dd>a character string containing a label of the data set.</dd>


<dt>BC_backbone</dt>
<dd>a character string containing the barcode structure information.</dd>


<dt>file_name</dt>
<dd>a character string containing the name of the file to read in.</dd>


<dt>s</dt>
<dd>a character value, identifying the column separating char.</dd>

</dl>

readBCdat: Data Input

Description

Usage

Value

Arguments