setBackbone

Replacing the Barcode Backbone slot of a BCdat objects.

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Lars Thielecke

genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

setBackbone function

<dl><dt>object</dt>
<dd>a BCdat object.</dd>
<dt>value</dt>
<dd>a character string consisting of exclusively IUPAC-nucleotide-code conform letters.</dd></dl>

Arguments

Replacing the Barcode Backbone slot of a BCdat objects. — setBackbone

<dl>

<dt>object</dt>
<dd>a BCdat object.</dd>


<dt>value</dt>
<dd>a character string consisting of exclusively IUPAC-nucleotide-code conform letters.</dd>

</dl>

setBackbone: Replacing the Barcode Backbone slot of a BCdat objects.

Description

Usage

Value

Arguments

Examples