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genbankr (version 1.0.3)

Parsing GenBank files into semantically useful objects

Description

Reads Genbank files.

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Version

Version

1.0.3

License

Artistic-2.0

Maintainer

Gabriel Becker

Last Published

February 15th, 2017

Functions in genbankr (1.0.3)

gbk-specific-api

genbankr specific api
variants

Retrieve variantion features
GenBankFile-class

GenBank File
GBAccession-class

GBAccession ID class
make_gbrecord

GenBank object constructors
import,GenBankFile,ANY,ANY-method

Import genbank file
parseGenBank

Parse raw genbank file content
intergenic

Extract intergenic regions from processed GenBank annotations
cds,GenBankRecord-method

Annotation extraction api
makeTxDbFromGenBank

Create a TxDb from a GenBank record
readGenBank

Read a GenBank File
GenBankRecord-class

GenBank data objects
otherFeatures

Retrieve 'other' features