This packages provides a suite for gene(s) haplotype analysis, phenotypes association and visualization of geography distribution.
Maintainer: Zhang Renliang zhang_renliang@163.com
Authors:
Jia Guanqing jiaguanqing@caas.cn
The haplotype analysis requires sequences such as fasta which could be import by import_vcf
A complete list of functions can be displayed with:
library(help = 'geneHapR').
Vignettes (documentation) can be listed with:
browseVignettes('geneHapR').
Several small example datasets are included in 'geneHapR'.
vcf and seqs provide a data set for test of seq2hap() and
seqs2hap().
gff provide a data set for visualization mutations on gene model.
pheno provide a data set for phenotype comparison between haplotypes.
AccINFO provide a data provide accessions information for
pie plot in hapNet visualization, and information for geography distrbution.
More documentation for 'geneHapR' could be found at repos under gitee