accessions_warning

A string vector containing protein identifiers.

protein_ids

Core function used by <code><a rd-options="" href="/link/getAccessions?package=geneHummus&version=1.0.11" data-mini-rdoc="geneHummus::getAccessions">getAccessions</a></code>.

A pipeline with high specificity and sensitivity in extracting
proteins from the RefSeq database (National Center for Biotechnology
Information). Manual identification of gene families is highly
time-consuming and laborious, requiring an iterative process of manual and
computational analysis to identify members of a given family. The pipelines
implements an automatic approach for the identification of gene families
based on the conserved domains that specifically define that family. See
Die et al. (2018) <doi:10.1101/436659> for more information and examples.

Jose V. Die

geneHummus

A Pipeline to Define Gene Families in Legumes and Beyond

Moamen M. Elmassry

Kimberly H. LeBlanc

Olaitan I. Awe

Allissa Dillman

Ben Busby

accessions_warning function

Core function used by <code><a rd-options='' href='getAccessions'>getAccessions</a></code>.

accessions_warning: Get acessions and organism for each protein identifier

Description

Usage

Arguments