archids_warning

<p>A string with conserved domain(s).</p>

gene_family

<p>Parses SPARCLE database (NCBI) and extract electronic identifiers for 
each conserved domain.</p>

A pipeline with high specificity and sensitivity in extracting
proteins from the RefSeq database (National Center for Biotechnology
Information). Manual identification of gene families is highly
time-consuming and laborious, requiring an iterative process of manual and
computational analysis to identify members of a given family. The pipelines
implements an automatic approach for the identification of gene families
based on the conserved domains that specifically define that family. See
Die et al. (2018) <doi:10.1101/436659> for more information and examples.

Jose V. Die

geneHummus

A Pipeline to Define Gene Families in Legumes and Beyond

Moamen M. Elmassry

Kimberly H. LeBlanc

Olaitan I. Awe

Allissa Dillman

Ben Busby

archids_warning function

Get architecture identifiers for the conserved domains — archids_warning

Get architecture identifiers for the conserved domains

archids_warning: Get architecture identifiers for the conserved domains

Description

Usage

Arguments