extract_proteins

A string with the electronic links for the SPARCLE architecture.

targets

A string with the taxonomic species identifiers;
legume species (by default).

taxonIds

Extract the protein identifier for the given taxonomic species, which are
 hosted by the RefSeq database (NCBI).

A pipeline with high specificity and sensitivity in extracting
proteins from the RefSeq database (National Center for Biotechnology
Information). Manual identification of gene families is highly
time-consuming and laborious, requiring an iterative process of manual and
computational analysis to identify members of a given family. The pipelines
implements an automatic approach for the identification of gene families
based on the conserved domains that specifically define that family. See
Die et al. (2018) <doi:10.1101/436659> for more information and examples.

Jose V. Die

geneHummus

extract_proteins: Get the protein identifiers

Description

Usage

Arguments

Details