filterarchids_warning

A string with the architecture identifiers.

archs_ids

A string with the domains as filter.

filter

Parse the architecture identifiers and extract those that contain, at
least, the conserved domaind selected as filter.

A pipeline with high specificity and sensitivity in extracting
proteins from the RefSeq database (National Center for Biotechnology
Information). Manual identification of gene families is highly
time-consuming and laborious, requiring an iterative process of manual and
computational analysis to identify members of a given family. The pipelines
implements an automatic approach for the identification of gene families
based on the conserved domains that specifically define that family. See
Die et al. (2018) <doi:10.1101/436659> for more information and examples.

Jose V. Die

geneHummus

filterarchids_warning: Filter protein architectures based on conserved domains

Description

Usage

Arguments