geneHummus (version 1.0.11)

getProteins_from_tax_ids: Get the RefSeq protein identifiers for the given taxonomic species

Description

Parse the RefSeq database using protein architecture identifiers (SPARCLE dabatse) and extract the protein ids. for the selected taxonomic species.

Usage

getProteins_from_tax_ids(arch_ids, taxonIds)

Arguments

arch_ids

A string with the electronic links for the SPARCLE.

taxonIds

A vector string with taxonomy ids; Legume species available in RefSeq, by default.

Value

RefSeq protein identifiers for selected species.

Examples

# NOT RUN {
filtered_archids <- c("12034184")
medicago <- c(3880)
getProteins_from_tax_ids(filtered_archids, medicago)

# }