getProtlinks

<p>A string with the architecture identifiers
(SPARCLE database, NCBI)</p>

archs_ids

<p>Parse the RefSeq database and extract all the protein identifiers that
have a given architecture.</p>

A pipeline with high specificity and sensitivity in extracting
proteins from the RefSeq database (National Center for Biotechnology
Information). Manual identification of gene families is highly
time-consuming and laborious, requiring an iterative process of manual and
computational analysis to identify members of a given family. The pipelines
implements an automatic approach for the identification of gene families
based on the conserved domains that specifically define that family. See
Die et al. (2018) <doi:10.1101/436659> for more information and examples.

Jose V. Die

geneHummus

A Pipeline to Define Gene Families in Legumes and Beyond

Moamen M. Elmassry

Kimberly H. LeBlanc

Olaitan I. Awe

Allissa Dillman

Ben Busby

getProtlinks function

Get the protein identifiers for a given architecture — getProtlinks

Get the protein identifiers for a given architecture

getProtlinks: Get the protein identifiers for a given architecture

Description

Usage

Arguments