getSparcleArchs

<p>A string with the conserved domain(s)</p>

<p>Parses the SPARCLE database (NCBI) and extract the electronic links for
a given conserved domain.</p>

A pipeline with high specificity and sensitivity in extracting
proteins from the RefSeq database (National Center for Biotechnology
Information). Manual identification of gene families is highly
time-consuming and laborious, requiring an iterative process of manual and
computational analysis to identify members of a given family. The pipelines
implements an automatic approach for the identification of gene families
based on the conserved domains that specifically define that family. See
Die et al. (2018) <doi:10.1101/436659> for more information and examples.

Jose V. Die

geneHummus

A Pipeline to Define Gene Families in Legumes and Beyond

Moamen M. Elmassry

Kimberly H. LeBlanc

Olaitan I. Awe

Allissa Dillman

Ben Busby

getSparcleArchs function

Get the electronic architecture for a conserved domain — getSparcleArchs

Get the electronic architecture for a conserved domain

getSparcleArchs: Get the electronic architecture for a conserved domain

Description

Usage

Arguments